HL_8EWC_093

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EWC|1|B5|G|656, 8EWC|1|B5|C|658, 8EWC|1|B5|G|676, 8EWC|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|U|649
8EWC|1|B5|U|650
8EWC|1|B5|G|651
8EWC|1|B5|G|652
8EWC|1|B5|C|653
8EWC|1|B5|C|654
8EWC|1|B5|G|655
8EWC|1|B5|G|656
8EWC|1|B5|U|657
8EWC|1|B5|C|658
8EWC|1|B5|G|676
8EWC|1|B5|G|677
8EWC|1|B5|A|678
8EWC|1|B5|U|679
8EWC|1|B5|U|680
8EWC|1|B5|U|681
8EWC|1|B5|C|682
8EWC|1|B5|C|683
8EWC|1|B5|A|684
8EWC|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1