HL_8EWC_094

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGUCCUUGUGGCU

Length

13 nucleotides

Bulged bases

8EWC|1|B5|C|716, 8EWC|1|B5|U|718, 8EWC|1|B5|U|721, 8EWC|1|B5|G|722

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_094 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2645

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8EWC|1|B5|A|713
8EWC|1|B5|G|714
8EWC|1|B5|U|715
8EWC|1|B5|C|716
8EWC|1|B5|C|717
8EWC|1|B5|U|718
8EWC|1|B5|U|719
8EWC|1|B5|G|720
8EWC|1|B5|U|721
8EWC|1|B5|G|722
8EWC|1|B5|G|723
8EWC|1|B5|C|724
8EWC|1|B5|U|725

Current chains

Chain B5

18S rRNA

Nearby chains