HL_8EWC_100

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAUCAGAUAC(OMC)G

Length

13 nucleotides

Bulged bases

8EWC|1|B5|U|1004

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|U|996
8EWC|1|B5|G|997
8EWC|1|B5|A|998
8EWC|1|B5|U|999
8EWC|1|B5|C|1000
8EWC|1|B5|A|1001
8EWC|1|B5|G|1002
8EWC|1|B5|A|1003
8EWC|1|B5|U|1004
8EWC|1|B5|A|1005
8EWC|1|B5|C|1006
8EWC|1|B5|OMC|1007
8EWC|1|B5|G|1008

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S ribosomal protein S14-A

Chain Ba

RPS26B isoform 1

Chain EC

internal ribosome entry site (IRES)