HL_8EWC_126
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- (OMC)CAAGG
- Length
- 6 nucleotides
- Bulged bases
- 8EWC|1|B5|A|416
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWC_126 not in the Motif Atlas
- Homologous match to HL_8P9A_200
- Geometric discrepancy: 0.1084
- The information below is about HL_8P9A_200
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 62
Unit IDs
8EWC|1|B5|OMC|414
8EWC|1|B5|C|415
8EWC|1|B5|A|416
8EWC|1|B5|A|417
8EWC|1|B5|G|418
8EWC|1|B5|G|419
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- RPL24A isoform 1
- Chain BG
- 40S ribosomal protein S6-A
- Chain BY
- 40S ribosomal protein S24-A
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