HL_8EYT_008

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EYT_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1069

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8EYT|1|A|A|320
8EYT|1|A|A|321
8EYT|1|A|C|322
8EYT|1|A|U|323
8EYT|1|A|G|324
8EYT|1|A|A|325
8EYT|1|A|G|326
8EYT|1|A|A|327
8EYT|1|A|C|328
8EYT|1|A|A|329
8EYT|1|A|C|330
8EYT|1|A|G|331
8EYT|1|A|G|332
8EYT|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20