HL_8EYT_020

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EYT_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0709

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8EYT|1|A|C|897
8EYT|1|A|G|898
8EYT|1|A|C|899
8EYT|1|A|A|900
8EYT|1|A|A|901
8EYT|1|A|G|902

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

Ribosomal RNA small subunit methyltransferase A