HL_8F4O_002
3D structure
- PDB id
- 8F4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Apo structure of the TPP riboswitch aptamer domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUAAUGC
- Length
- 8 nucleotides
- Bulged bases
- 8F4O|1|A|A|69, 8F4O|1|A|G|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8F4O_002 not in the Motif Atlas
- Geometric match to HL_5J7L_143
- Geometric discrepancy: 0.1323
- The information below is about HL_5J7L_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
8F4O|1|A|G|66
8F4O|1|A|A|67
8F4O|1|A|U|68
8F4O|1|A|A|69
8F4O|1|A|A|70
8F4O|1|A|U|71
8F4O|1|A|G|72
8F4O|1|A|C|73
Current chains
- Chain A
- TPP riboswitch aptamer domain
Nearby chains
- Chain B
- TPP riboswitch (THI element)
Coloring options: