HL_8FC1_100

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC1_100 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0735

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FC1|1|1a|C|1314
8FC1|1|1a|U|1315
8FC1|1|1a|G|1316
8FC1|1|1a|C|1317
8FC1|1|1a|A|1318
8FC1|1|1a|A|1319
8FC1|1|1a|C|1320
8FC1|1|1a|C|1321
8FC1|1|1a|C|1322
8FC1|1|1a|G|1323

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1n

30S ribosomal protein S14 type Z

Chain 1s

30S ribosomal protein S19