HL_8FC1_115

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8FC1|1|2A|G|329, 8FC1|1|2A|A|330, 8FC1|1|2A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC1_115 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.089

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8FC1|1|2A|G|327
8FC1|1|2A|U|328
8FC1|1|2A|G|329
8FC1|1|2A|A|330
8FC1|1|2A|A|331
8FC1|1|2A|A|332
8FC1|1|2A|G|333
8FC1|1|2A|C|334
8FC1|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24