HL_8FC2_027

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC2_027 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0277

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8FC2|1|1A|G|978
8FC2|1|1A|G|979
8FC2|1|1A|A|980
8FC2|1|1A|A|981
8FC2|1|1A|C|982
8FC2|1|1A|A|983
8FC2|1|1A|A|984
8FC2|1|1A|C|985

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1U

50S ribosomal protein L20