HL_8FC2_083

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC2_083 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.0733

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC2|1|1a|G|521
8FC2|1|1a|C|522
8FC2|1|1a|A|523
8FC2|1|1a|G|524
8FC2|1|1a|C|525
8FC2|1|1a|C|526
8FC2|1|1a|G7M|527
8FC2|1|1a|C|528

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12