HL_8FC2_150

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC2_150 not in the Motif Atlas

Homologous match to HL_7RQB_047

Geometric discrepancy: 0.119

The information below is about HL_7RQB_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8FC2|1|2A|U|1864
8FC2|1|2A|G|1865
8FC2|1|2A|C|1866
8FC2|1|2A|A|1876
8FC2|1|2A|A|1877
8FC2|1|2A|G|1878

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains