HL_8FC2_162

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

8FC2|1|2A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC2_162 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0641

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

8FC2|1|2A|C|2404
8FC2|1|2A|G|2405
8FC2|1|2A|U|2406
8FC2|1|2A|G|2407
8FC2|1|2A|U|2408
8FC2|1|2A|G|2409
8FC2|1|2A|G|2410
8FC2|1|2A|A|2411
8FC2|1|2A|A|2412
8FC2|1|2A|G|2413

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15