HL_8FC3_153

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

8FC3|1|2A|U|2144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC3_153 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.3716

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8FC3|1|2A|C|2142
8FC3|1|2A|C|2143
8FC3|1|2A|U|2144
8FC3|1|2A|C|2145
8FC3|1|2A|C|2146
8FC3|1|2A|G|2147
8FC3|1|2A|G|2148
8FC3|1|2A|G|2149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains