HL_8FC3_181

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC3_181 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0809

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FC3|1|2a|C|320
8FC3|1|2a|A|321
8FC3|1|2a|C|322
8FC3|1|2a|U|323
8FC3|1|2a|G|324
8FC3|1|2a|A|325
8FC3|1|2a|G|326
8FC3|1|2a|A|327
8FC3|1|2a|C|328
8FC3|1|2a|A|329
8FC3|1|2a|C|330
8FC3|1|2a|G|331
8FC3|1|2a|G|332
8FC3|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20