HL_8FC4_050

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

8FC4|1|1A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC4_050 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3307

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8FC4|1|1A|C|2142
8FC4|1|1A|C|2143
8FC4|1|1A|U|2144
8FC4|1|1A|C|2145
8FC4|1|1A|C|2146
8FC4|1|1A|G|2147
8FC4|1|1A|G|2148
8FC4|1|1A|G|2149

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains