HL_8FC5_134

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGUGGCUUAGAAGCAGCCAUCC

Length

22 nucleotides

Bulged bases

8FC5|1|2A|G|1068, 8FC5|1|2A|U|1078

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|2A|G|1058
8FC5|1|2A|G|1059
8FC5|1|2A|U|1060
8FC5|1|2A|G|1062
8FC5|1|2A|G|1063
8FC5|1|2A|C|1064
8FC5|1|2A|U|1065
8FC5|1|2A|U|1066
8FC5|1|2A|A|1067
8FC5|1|2A|G|1068
8FC5|1|2A|A|1069
8FC5|1|2A|A|1070
8FC5|1|2A|G|1071
8FC5|1|2A|C|1072
8FC5|1|2A|A|1073
8FC5|1|2A|G|1074
8FC5|1|2A|C|1075
8FC5|1|2A|C|1076
8FC5|1|2A|A|1077
8FC5|1|2A|U|1078
8FC5|1|2A|C|1079
8FC5|1|2A|C|1080

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25