HL_8FC5_141

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8FC5|1|2A|U|1396, 8FC5|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_141 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0627

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FC5|1|2A|G|1389
8FC5|1|2A|U|1390
8FC5|1|2A|U|1391
8FC5|1|2A|A|1392
8FC5|1|2A|A|1393
8FC5|1|2A|U|1394
8FC5|1|2A|A|1395
8FC5|1|2A|U|1396
8FC5|1|2A|U|1397
8FC5|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23