HL_8FC5_154

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

8FC5|1|2A|A|1913, 8FC5|1|2A|C|1914, 8FC5|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_154 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1008

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|2A|C|1909
8FC5|1|2A|G|1910
8FC5|1|2A|PSU|1911
8FC5|1|2A|A|1912
8FC5|1|2A|A|1913
8FC5|1|2A|C|1914
8FC5|1|2A|5MU|1915
8FC5|1|2A|A|1916
8FC5|1|2A|PSU|1917
8FC5|1|2A|A|1918
8FC5|1|2A|A|1919
8FC5|1|2A|OMC|1920
8FC5|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Ribosome-associated inhibitor A