HL_8FC5_218

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_218 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0988

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FC5|1|1A|G|2304
8FC5|1|1A|A|2305
8FC5|1|1A|C|2306
8FC5|1|1A|G|2307
8FC5|1|1A|G|2308
8FC5|1|1A|A|2309
8FC5|1|1A|A|2310
8FC5|1|1A|A|2311
8FC5|1|1A|U|2312

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5