HL_8FIZ_003

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.5411

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8FIZ|1|AA|G|158
8FIZ|1|AA|G|159
8FIZ|1|AA|A|160
8FIZ|1|AA|A|161
8FIZ|1|AA|A|162
8FIZ|1|AA|C|163

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20

Chain BW

50S ribosomal protein L19