HL_8FIZ_013

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_013 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2461

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FIZ|1|AA|C|522
8FIZ|1|AA|A|523
8FIZ|1|AA|G|524
8FIZ|1|AA|C|525
8FIZ|1|AA|C|526
8FIZ|1|AA|G|527

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12