HL_8FIZ_016

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_016 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1352

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8FIZ|1|AA|C|726
8FIZ|1|AA|G|727
8FIZ|1|AA|A|728
8FIZ|1|AA|A|729
8FIZ|1|AA|G|730
8FIZ|1|AA|G|731

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AR

30S ribosomal protein S15

Chain AU

30S ribosomal protein S21