HL_8FIZ_022

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

8FIZ|1|AA|A|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_022 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.235

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8FIZ|1|AA|A|1012
8FIZ|1|AA|G|1013
8FIZ|1|AA|A|1014
8FIZ|1|AA|G|1015
8FIZ|1|AA|A|1016
8FIZ|1|AA|U|1017

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S19

Chain AF

30S ribosomal protein S14