HL_8FIZ_023

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_023 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.1245

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8FIZ|1|AA|U|1076
8FIZ|1|AA|G|1077
8FIZ|1|AA|U|1078
8FIZ|1|AA|G|1079
8FIZ|1|AA|A|1080
8FIZ|1|AA|A|1081

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S2

Chain AP

30S ribosomal protein S5