HL_8FIZ_026

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8FIZ|1|AA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.1565

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FIZ|1|AA|U|1165
8FIZ|1|AA|G|1166
8FIZ|1|AA|A|1167
8FIZ|1|AA|U|1168
8FIZ|1|AA|A|1169
8FIZ|1|AA|A|1170
8FIZ|1|AA|A|1171

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S2