HL_8FIZ_037

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8FIZ|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_037 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1281

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8FIZ|1|BA|G|194
8FIZ|1|BA|A|195
8FIZ|1|BA|A|196
8FIZ|1|BA|A|197
8FIZ|1|BA|C|198
8FIZ|1|BA|A|199
8FIZ|1|BA|U|200
8FIZ|1|BA|C|201

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L15

Chain DE

50S ribosomal protein L28