HL_8FIZ_065

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8FIZ|1|BA|U|1396, 8FIZ|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_065 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1615

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|G|1389
8FIZ|1|BA|U|1390
8FIZ|1|BA|U|1391
8FIZ|1|BA|A|1392
8FIZ|1|BA|A|1393
8FIZ|1|BA|U|1394
8FIZ|1|BA|A|1395
8FIZ|1|BA|U|1396
8FIZ|1|BA|U|1397
8FIZ|1|BA|C|1398

Current chains

Chain BA

23S rRNA

Nearby chains

Chain DA

50S ribosomal protein L23