HL_8FIZ_078

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8FIZ|1|BA|A|1912, 8FIZ|1|BA|A|1913, 8FIZ|1|BA|U|1915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_078 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2381

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8FIZ|1|BA|G|1910
8FIZ|1|BA|U|1911
8FIZ|1|BA|A|1912
8FIZ|1|BA|A|1913
8FIZ|1|BA|C|1914
8FIZ|1|BA|U|1915
8FIZ|1|BA|A|1916
8FIZ|1|BA|U|1917
8FIZ|1|BA|A|1918
8FIZ|1|BA|A|1919
8FIZ|1|BA|C|1920

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Transfer RNA; tRNA