HL_8FIZ_101

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

8FIZ|1|BB|C|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_101 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.1885

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8FIZ|1|BB|G|32
8FIZ|1|BB|C|33
8FIZ|1|BB|U|34
8FIZ|1|BB|C|35
8FIZ|1|BB|A|36
8FIZ|1|BB|U|37
8FIZ|1|BB|A|38
8FIZ|1|BB|A|39
8FIZ|1|BB|C|40

Current chains

Chain BB

P-site tRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AK

30S ribosomal protein S9

Chain AW

mRNA