HL_8FIZ_108

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

8FIZ|1|BA|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_108 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.5588

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8FIZ|1|BA|G|2304
8FIZ|1|BA|U|2305
8FIZ|1|BA|C|2306
8FIZ|1|BA|G|2307
8FIZ|1|BA|G|2308
8FIZ|1|BA|A|2309
8FIZ|1|BA|C|2310
8FIZ|1|BA|A|2311
8FIZ|1|BA|U|2312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L5