HL_8FKP_026

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGC

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKP_026 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1735

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKP|1|L3|G|2102
8FKP|1|L3|G|2103
8FKP|1|L3|C|2258

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NO

Ribosomal RNA processing protein 1 homolog A

Chain SA

60S ribosomal protein L4

Chain SD

60S ribosomal protein L7