HL_8FKP_031

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

8FKP|1|L3|A|4648, 8FKP|1|L3|G|4650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKP_031 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2635

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8FKP|1|L3|U|4646
8FKP|1|L3|G|4647
8FKP|1|L3|A|4648
8FKP|1|L3|G|4649
8FKP|1|L3|G|4650
8FKP|1|L3|A|4651

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NG

RRP15-like protein

Chain NN

Suppressor of SWI4 1 homolog