HL_8FKR_016

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKR_016 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0965

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FKR|1|L3|U|393
8FKR|1|L3|G|394
8FKR|1|L3|A|395
8FKR|1|L3|A|396
8FKR|1|L3|G|397
8FKR|1|L3|A|398

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain NE

Surfeit locus protein 6

Chain NG

RRP15-like protein

Chain NS

Ribosome production factor 1