HL_8FKR_020

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAAGC

Length

5 nucleotides

Bulged bases

8FKR|1|L3|G|1654

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKR_020 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2402

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8FKR|1|L3|G|1522
8FKR|1|L3|A|1523
8FKR|1|L3|A|1653
8FKR|1|L3|G|1654
8FKR|1|L3|C|1655

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NE

Surfeit locus protein 6

Chain SA

60S ribosomal protein L4