HL_8FKR_024

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8FKR|1|L3|A|1891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKR_024 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.3663

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8FKR|1|L3|G|1886
8FKR|1|L3|G|1887
8FKR|1|L3|A|1888
8FKR|1|L3|U|1889
8FKR|1|L3|G|1890
8FKR|1|L3|A|1891
8FKR|1|L3|A|1892
8FKR|1|L3|C|1893

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain LT

60S ribosomal protein L35a