HL_8FKR_033

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

8FKR|1|L3|A|4648, 8FKR|1|L3|G|4650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKR_033 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2748

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8FKR|1|L3|U|4646
8FKR|1|L3|G|4647
8FKR|1|L3|A|4648
8FKR|1|L3|G|4649
8FKR|1|L3|G|4650
8FKR|1|L3|A|4651

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NN

Suppressor of SWI4 1 homolog