HL_8FKS_007

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

8FKS|1|L3|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_007 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.078

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8FKS|1|L3|U|68
8FKS|1|L3|A|69
8FKS|1|L3|A|70
8FKS|1|L3|C|71
8FKS|1|L3|C|72
8FKS|1|L3|A|73

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain LU

60S ribosomal protein L36

Chain SO

Ribosome biogenesis protein BRX1 homolog