HL_8FKS_010

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8FKS|1|L3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_010 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2416

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8FKS|1|L3|U|204
8FKS|1|L3|C|205
8FKS|1|L3|U|206
8FKS|1|L3|G|207
8FKS|1|L3|A|208
8FKS|1|L3|U|209
8FKS|1|L3|C|210
8FKS|1|L3|G|211

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain LQ

60S ribosomal protein L32