HL_8FKS_030

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GCGC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_030 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2591

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKS|1|L3|G|4416
8FKS|1|L3|C|4417
8FKS|1|L3|G|4425
8FKS|1|L3|C|4426

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L18a

Chain SN

Probable rRNA-processing protein EBP2