HL_8FKS_034
3D structure
- PDB id
- 8FKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8FKS|1|L3|G|4694, 8FKS|1|L3|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKS_034 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8FKS|1|L3|C|4688
8FKS|1|L3|U|4689
8FKS|1|L3|G|4690
8FKS|1|L3|A|4691
8FKS|1|L3|A|4692
8FKS|1|L3|C|4693
8FKS|1|L3|G|4694
8FKS|1|L3|C|4695
8FKS|1|L3|C|4696
8FKS|1|L3|U|4697
8FKS|1|L3|C|4698
8FKS|1|L3|U|4699
8FKS|1|L3|A|4700
8FKS|1|L3|A|4701
8FKS|1|L3|G|4702
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L7
- 60S ribosomal protein L13a
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain SG
- 60S ribosomal protein L9
- Chain SQ
- mRNA turnover protein 4 homolog
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