HL_8FKS_036

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8FKS|1|L3|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_036 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.167

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8FKS|1|L3|G|4975
8FKS|1|L3|U|4976
8FKS|1|L3|A|4977
8FKS|1|L3|G|4978
8FKS|1|L3|A|4979
8FKS|1|L3|C|4980
8FKS|1|L3|G|4981
8FKS|1|L3|A|4982
8FKS|1|L3|C|4983

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain NN

Suppressor of SWI4 1 homolog