HL_8FKU_010

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8FKU|1|L3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKU_010 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2277

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8FKU|1|L3|U|204
8FKU|1|L3|C|205
8FKU|1|L3|U|206
8FKU|1|L3|G|207
8FKU|1|L3|A|208
8FKU|1|L3|U|209
8FKU|1|L3|C|210
8FKU|1|L3|G|211

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26