HL_8FKU_029

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKU_029 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.0971

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FKU|1|L3|C|2317
8FKU|1|L3|G|2318
8FKU|1|L3|C|2319
8FKU|1|L3|G|2320
8FKU|1|L3|G|2321
8FKU|1|L3|G|2322

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L28

Chain LQ

60S ribosomal protein L32