HL_8FKU_042

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8FKU|1|L3|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKU_042 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.1656

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8FKU|1|L3|G|4975
8FKU|1|L3|U|4976
8FKU|1|L3|A|4977
8FKU|1|L3|G|4978
8FKU|1|L3|A|4979
8FKU|1|L3|C|4980
8FKU|1|L3|G|4981
8FKU|1|L3|A|4982
8FKU|1|L3|C|4983

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LN

60S ribosomal protein L3