HL_8FKV_001

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAGCUAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKV|1|L1|C|47
8FKV|1|L1|A|48
8FKV|1|L1|G|49
8FKV|1|L1|C|50
8FKV|1|L1|U|51
8FKV|1|L1|A|52
8FKV|1|L1|G|53
8FKV|1|L1|C|54
8FKV|1|L1|U|55
8FKV|1|L1|G|56

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LS

60S ribosomal protein L35

Chain LW

60S ribosomal protein L37

Chain NS

Ribosome production factor 1

Chain SZ

Nucleolar protein 16