HL_8FKV_010
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 8FKV|1|L3|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKV_010 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.2222
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8FKV|1|L3|U|204
8FKV|1|L3|C|205
8FKV|1|L3|U|206
8FKV|1|L3|G|207
8FKV|1|L3|A|208
8FKV|1|L3|U|209
8FKV|1|L3|C|210
8FKV|1|L3|G|211
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L26
- Chain LQ
- 60S ribosomal protein L32
- Chain NM
- Protein MAK16 homolog
- Chain NQ
- WD repeat-containing protein 74
- Chain NS
- Ribosome production factor 1
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