HL_8FKV_015

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_015 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.0832

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FKV|1|L3|C|368
8FKV|1|L3|G|369
8FKV|1|L3|U|370
8FKV|1|L3|A|371
8FKV|1|L3|A|372
8FKV|1|L3|G|373

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L37

Chain SA

60S ribosomal protein L4