HL_8FKV_023

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_023 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.152

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKV|1|L3|C|1675
8FKV|1|L3|C|1676
8FKV|1|L3|G|1680

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Chain SN

Probable rRNA-processing protein EBP2

Chain ST

Ribosome biogenesis regulatory protein homolog