HL_8FKV_036

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8FKV|1|L3|G|3875, 8FKV|1|L3|A|3876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_036 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.0906

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKV|1|L3|G|3873
8FKV|1|L3|G|3874
8FKV|1|L3|G|3875
8FKV|1|L3|A|3876
8FKV|1|L3|A|3877
8FKV|1|L3|C|3878
8FKV|1|L3|G|3879
8FKV|1|L3|G|3880
8FKV|1|L3|G|3881
8FKV|1|L3|C|3882

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain NB

Guanine nucleotide-binding protein-like 3